| Tool Name | Brief Description | Documentation |
| mstToARC | converts MAGICC/SCENGEN files to ARCGIS ASCII-format files | HTML |
| mstScalar | multiplies or divides each element in the map by a scalar value | HTML |
| mstCrop | crops a map according to specified bounds | HTML |
| mstMask | performs a masking operation over a map | HTML |
| mstIntersection | finds the common areas in two maps | HTML |
| mstOverlay | overlays one map onto another | HTML |
| mstAvg | finds the average of several maps | HTML |
| mstMovingAvg | finds the moving average of a time-series of maps | HTML |
| mstBilinearInterpolate | performs bilinear interpolation on a map | HTML |
| mstValueCounts | counts the number of times each value appears in a map | HTML |